miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31991	+	2314	89	20	-20.4	YP_224143		5' arm      3' arm
31992	+	4883	89	19.5	-20.6	YP_224145		5' arm      3' arm
31993	+	5241	90	20	-23.6	YP_224145		5' arm      3' arm
31994	+	7724	87	22	-23.1	YP_224149		5' arm      3' arm
31995	+	10316	89	20	-20.6	YP_224155		5' arm      3' arm
31996	+	14153	90	22.5	-23.3	YP_224159		5' arm      3' arm
31997	+	14380	90	21.5	-23.9	YP_224159		5' arm      3' arm
31998	+	16261	89	21.5	-24.8	YP_224159		5' arm      3' arm
31999	+	19814	89	24	-22.7	YP_224166		5' arm      3' arm
32000	+	23380	87	23.5	-24.2	YP_224168		5' arm      3' arm
32001	+	25014	87	21.5	-19.4	YP_224171		5' arm      3' arm
32002	+	28456	87	21.5	-29.5	YP_224175		5' arm      3' arm
32003	+	34777	86	20.5	-20.8	YP_224191		5' arm      3' arm
32004	+	34869	89	31.5	-28.3	YP_224191		5' arm      3' arm
32005	+	35004	89	27	-21	YP_224191		5' arm      3' arm
32006	+	37987	87	20	-33.9	YP_224197		5' arm      3' arm
32007	+	38796	90	20	-20.6	YP_224199		5' arm      3' arm
32008	+	39164	89	21	-20.2	YP_224199		5' arm      3' arm
32009	+	39658	87	20.5	-19.8	YP_224199		5' arm      3' arm
32010	+	45694	88	22.5	-22.8			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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