miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5534 + 2878 88 25.5 -27.3 5' arm      3' arm
5639 + 62288 89 20.5 -23.1 5' arm      3' arm
5675 + 84379 90 20 -24.5 5' arm      3' arm
5626 + 50676 86 22 -21.3 5' arm      3' arm
5594 + 34865 90 19 -24 5' arm      3' arm
5577 + 26850 89 23 -28.7 5' arm      3' arm
5627 + 52915 90 21 -22 5' arm      3' arm
5632 + 58120 88 21 -24.5 5' arm      3' arm
5580 + 28927 78 20 -29.4 5' arm      3' arm
5591 + 33542 89 20.5 -25.5 5' arm      3' arm
5559 + 18070 90 23 -26.5 5' arm      3' arm
5542 + 7490 90 19.5 -19.4 5' arm      3' arm
5533 + 414 88 20 -28.72 5' arm      3' arm
5536 + 3815 90 20 -26 5' arm      3' arm
5616 + 46499 83 20.5 -24.3 5' arm      3' arm
5543 + 7967 90 29 -31.1 5' arm      3' arm
5782 - 2477 89 20.5 -28.8 5' arm      3' arm
5539 + 5859 87 20 -30.5 5' arm      3' arm
5540 + 5959 89 20 -23.7 5' arm      3' arm
5541 + 6697 83 20 -19.9 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.