miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5608 + 41482 77 19.5 -24.3 5' arm      3' arm
5591 + 33542 89 20.5 -25.5 5' arm      3' arm
5533 + 414 88 20 -28.72 5' arm      3' arm
5536 + 3815 90 20 -26 5' arm      3' arm
5580 + 28927 78 20 -29.4 5' arm      3' arm
5543 + 7967 90 29 -31.1 5' arm      3' arm
5771 + 146189 88 24 -28.3 5' arm      3' arm
5539 + 5859 87 20 -30.5 5' arm      3' arm
5540 + 5959 89 20 -23.7 5' arm      3' arm
5541 + 6697 83 20 -19.9 5' arm      3' arm
5542 + 7490 90 19.5 -19.4 5' arm      3' arm
5534 + 2878 88 25.5 -27.3 5' arm      3' arm
5736 + 123794 89 23 -29.7 5' arm      3' arm
5747 + 134955 90 20 -21.4 5' arm      3' arm
5743 + 132561 90 19.5 -24.7 5' arm      3' arm
5732 + 122451 90 19 -24.9 5' arm      3' arm
5749 + 136678 90 21.5 -20.1 5' arm      3' arm
5735 + 123405 89 28 -28.2 5' arm      3' arm
5742 + 131957 88 21 -30.6 5' arm      3' arm
5740 + 126714 88 24.5 -21.5 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.