miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5647 + 68102 89 19 -20.3 NP_044634 5' arm      3' arm
5622 + 48904 87 19 -23.3 NP_044626 5' arm      3' arm
5649 + 69226 90 19 -25 NP_044635 5' arm      3' arm
5927 - 92402 90 19 -22.8 NP_044643 5' arm      3' arm
5968 - 122911 87 19 -26.7 NP_044660 5' arm      3' arm
5535 + 3460 87 19 -26.7 NP_044660 5' arm      3' arm
5957 - 115806 90 19 -20.3 NP_044658 5' arm      3' arm
5704 + 98921 87 19 -33.9 NP_044648 5' arm      3' arm
5646 + 66789 90 19 -24.4 NP_044633 5' arm      3' arm
5695 + 94515 85 19 -29.8 NP_044644 5' arm      3' arm
5732 + 122451 90 19 -24.9 5' arm      3' arm
5538 + 5194 90 19 -30.3 NP_044660 5' arm      3' arm
5995 - 141467 90 19 -26.6 NP_044670 5' arm      3' arm
5692 + 93375 90 19 -21.1 NP_044644 5' arm      3' arm
5623 + 49165 88 19 -27.9 NP_044626 5' arm      3' arm
5766 + 144685 86 19 -23.3 NP_044673 5' arm      3' arm
5765 + 144329 88 19 -21.2 NP_044673 5' arm      3' arm
5885 - 66696 88 19 -21.8 NP_044633 5' arm      3' arm
5617 + 46900 90 19 -26.6 NP_044624 5' arm      3' arm
5609 + 42881 88 19 -24.7 NP_044622 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.