miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5937	-	102130	90	24	-32.3	NP_044649		5' arm      3' arm
5973	-	129249	89	22	-32.2	NP_044676		5' arm      3' arm
5709	+	106130	88	21	-32.2	NP_044651		5' arm      3' arm
5902	-	79861	88	23	-32	NP_044638		5' arm      3' arm
5549	+	11117	72	19	-31.7	NP_044604		5' arm      3' arm
5586	+	31140	81	23	-31.7	NP_044617		5' arm      3' arm
5610	+	43534	88	23.5	-31.7	NP_044622		5' arm      3' arm
5697	+	95902	89	21.5	-31.6	NP_044645		5' arm      3' arm
5898	-	76470	89	21.5	-31.5	NP_044638		5' arm      3' arm
5563	+	20228	88	21	-31.4	NP_044609		5' arm      3' arm
5689	+	90095	84	23.5	-31.4	NP_044642		5' arm      3' arm
5602	+	37757	88	23	-31.3	NP_044620		5' arm      3' arm
5547	+	10676	89	21.5	-31.3	NP_044603		5' arm      3' arm
5982	-	132843	89	22	-31.2	NP_044663		5' arm      3' arm
5543	+	7967	90	29	-31.1			5' arm      3' arm
5960	-	118404	90	29	-31.1			5' arm      3' arm
5767	+	144880	88	27.5	-31	NP_044673		5' arm      3' arm
5911	-	83630	90	23	-30.9	NP_044639		5' arm      3' arm
5555	+	16257	90	20	-30.6	NP_044607		5' arm      3' arm
6000	-	146276	88	21	-30.6			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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