miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5922 - 89370 89 24.5 -21.1 NP_044641 5' arm      3' arm
6003 - 151519 88 24.5 -21.5 5' arm      3' arm
5779 + 151782 88 24.5 -19.6 5' arm      3' arm
5740 + 126714 88 24.5 -21.5 5' arm      3' arm
5791 - 6625 89 24.5 -24 5' arm      3' arm
5728 + 119746 89 24.5 -24 5' arm      3' arm
5664 + 79088 90 24.5 -24.2 NP_044638 5' arm      3' arm
5971 - 126451 88 24.5 -19.6 5' arm      3' arm
5640 + 63544 90 24.5 -19.8 NP_044632 5' arm      3' arm
5630 + 54719 89 24.5 -29.9 NP_044629 5' arm      3' arm
5855 - 49705 89 24 -28 NP_044626 5' arm      3' arm
5771 + 146189 88 24 -28.3 5' arm      3' arm
5937 - 102130 90 24 -32.3 NP_044649 5' arm      3' arm
5813 - 22303 87 24 -22.1 NP_044610       
5980 - 132044 88 24 -28.3 5' arm      3' arm
5827 - 33166 90 24 -26.1 NP_044618 5' arm      3' arm
5701 + 97478 89 24 -20.3 NP_044646 5' arm      3' arm
5689 + 90095 84 23.5 -31.4 NP_044642 5' arm      3' arm
5884 - 66074 87 23.5 -22 NP_044632 5' arm      3' arm
5859 - 53615 84 23.5 -25.3 NP_044629 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.