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| GenBank Identifier | RefSeq Acc. | Name |
| 9629378 | NC_001806.1 | Human herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5759 | + | 141555 | 89 | 19.5 | -19.7 | NP_044670 | 5' arm 3' arm | ||
| 5758 | + | 141425 | 87 | 22 | -22.1 | NP_044670 | 5' arm 3' arm | ||
| 5754 | + | 139783 | 90 | 21 | -23.8 | NP_044669 | 5' arm 3' arm | ||
| 5755 | + | 139912 | 88 | 20 | -27.6 | NP_044669 | 5' arm 3' arm | ||
| 5756 | + | 140198 | 87 | 21 | -21.7 | NP_044669 | 5' arm 3' arm | ||
| 5994 | - | 140211 | 89 | 21 | -24.7 | NP_044669 | 5' arm 3' arm | ||
| 5752 | + | 138654 | 81 | 19.5 | -24.7 | NP_044668 | 5' arm 3' arm | ||
| 5993 | - | 139257 | 89 | 20 | -24.2 | NP_044668 | 5' arm 3' arm | ||
| 5751 | + | 137698 | 90 | 21.5 | -22.5 | NP_044667 | 5' arm 3' arm | ||
| 5989 | - | 137131 | 88 | 22 | -22.9 | NP_044666 | 5' arm 3' arm | ||
| 5750 | + | 137375 | 87 | 21 | -22.5 | NP_044666 | 5' arm 3' arm | ||
| 5988 | - | 136996 | 87 | 20 | -22.3 | NP_044666 | 5' arm 3' arm | ||
| 5985 | - | 135666 | 86 | 21 | -20.4 | NP_044665 | 5' arm 3' arm | ||
| 5748 | + | 135905 | 89 | 19.5 | -20.6 | NP_044665 | 5' arm 3' arm | ||
| 5987 | - | 136085 | 90 | 20.5 | -19.5 | NP_044665 | 5' arm 3' arm | ||
| 5986 | - | 135825 | 86 | 19.5 | -21.6 | NP_044665 | 5' arm 3' arm | ||
| 5746 | + | 134857 | 89 | 21 | -26.4 | NP_044664 | 5' arm 3' arm | ||
| 5983 | - | 133424 | 84 | 21.5 | -22.6 | NP_044663 | 5' arm 3' arm | ||
| 5744 | + | 132755 | 86 | 23.5 | -27.5 | NP_044663 | 5' arm 3' arm | ||
| 5745 | + | 133674 | 88 | 21 | -22.5 | NP_044663 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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