miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6690 - 130237 79 20.5 -24.9 5' arm      3' arm
6689 - 130134 83 24.5 -31.2 5' arm      3' arm
6688 - 129632 88 23 -30.1 5' arm      3' arm
6687 - 128476 90 21.5 -22.81 5' arm      3' arm
6686 - 127288 86 25.5 -21.9 5' arm      3' arm
6685 - 127130 89 23.5 -20.12 5' arm      3' arm
6684 - 123664 88 22 -25.2 NP_045373 5' arm      3' arm
6683 - 123449 90 21 -22.9 NP_045372 5' arm      3' arm
6682 - 121455 89 24.5 -24.6 NP_045371 5' arm      3' arm
6681 - 121307 90 19 -20.7 NP_045371 5' arm      3' arm
6680 - 120658 87 19 -32.9 NP_045371 5' arm      3' arm
6679 - 119667 87 19 -23.4 NP_045370 5' arm      3' arm
6678 - 118894 90 20 -26.9 5' arm      3' arm
6677 - 118390 85 20.5 -23.9 NP_045369 5' arm      3' arm
6676 - 118049 90 19.5 -26 NP_045369 5' arm      3' arm
6675 - 117079 89 21.5 -25.7 NP_045368 5' arm      3' arm
6674 - 116584 88 20 -21.6 NP_045368 5' arm      3' arm
6673 - 116468 90 19.5 -21.4 NP_045368 5' arm      3' arm
6672 - 116033 90 20 -20 NP_045368 5' arm      3' arm
6671 - 115714 90 20.5 -24.6 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.