miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6344 + 79 90 19.5 -22 5' arm      3' arm
6345 + 2183 88 21 -22.5 NP_045304 5' arm      3' arm
6346 + 2328 89 22.5 -33.3 NP_045304 5' arm      3' arm
6347 + 2744 89 23 -20.4 NP_045304 5' arm      3' arm
6348 + 3013 90 19.5 -22.5 NP_045305 5' arm      3' arm
6349 + 4126 87 20.5 -26.5 NP_045306 5' arm      3' arm
6350 + 6758 89 23 -22.3 NP_045306 5' arm      3' arm
6351 + 7037 88 19 -22.6 NP_045306 5' arm      3' arm
6352 + 8492 90 22 -23.8 NP_045308 5' arm      3' arm
6353 + 9094 88 21 -23.12 NP_045309 5' arm      3' arm
6354 + 9236 90 19.5 -19.6 5' arm      3' arm
6355 + 10647 87 19 -20.6 NP_045311 5' arm      3' arm
6356 + 10739 84 24 -23.3 NP_045311 5' arm      3' arm
6357 + 10979 89 21.5 -23.5 NP_045311 5' arm      3' arm
6358 + 13765 90 22.5 -19.4 NP_045312 5' arm      3' arm
6359 + 13979 90 20.5 -24.8 NP_045312 5' arm      3' arm
6360 + 15651 89 22 -22.5 NP_045313 5' arm      3' arm
6361 + 16888 89 19 -27.8 NP_045314 5' arm      3' arm
6362 + 17093 90 21 -21.5 NP_045314 5' arm      3' arm
6363 + 17408 90 24 -26 NP_045314 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.