miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6364 + 17761 87 20.5 -24.6 NP_045314 5' arm      3' arm
6365 + 18244 90 21 -21.4 5' arm      3' arm
6366 + 18921 90 21.5 -29.1 NP_045315 5' arm      3' arm
6367 + 20188 90 20 -24.1 NP_045316 5' arm      3' arm
6368 + 20440 89 19.5 -28.9 NP_045316 5' arm      3' arm
6369 + 21765 89 22 -26.1 NP_045317 5' arm      3' arm
6370 + 23333 86 19 -23.2 NP_045318 5' arm      3' arm
6371 + 23689 90 19.5 -21.5 NP_045319 5' arm      3' arm
6372 + 24324 87 19.5 -29.4 NP_045319 5' arm      3' arm
6373 + 24893 89 19 -25.6 NP_045319 5' arm      3' arm
6374 + 25439 89 23.5 -21.1 NP_045319 5' arm      3' arm
6375 + 26268 89 19 -21.8 NP_045320 5' arm      3' arm
6376 + 26629 89 19 -19.8 NP_045320 5' arm      3' arm
6377 + 26980 86 20 -24.3 NP_045320 5' arm      3' arm
6378 + 27097 89 22.5 -23.6 NP_045320 5' arm      3' arm
6379 + 27640 90 21.5 -21 5' arm      3' arm
6380 + 28102 86 20 -24.4 NP_045321 5' arm      3' arm
6381 + 29874 90 21.5 -28.3 NP_045321 5' arm      3' arm
6382 + 29971 89 22 -30.3 NP_045321 5' arm      3' arm
6383 + 31275 89 19 -24.8 NP_045322 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.