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GenBank Identifier | RefSeq Acc. | Name |
9629818 | NC_001847.1 | Bovine herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6364 | + | 17761 | 87 | 20.5 | -24.6 | NP_045314 | 5' arm 3' arm | ||
6365 | + | 18244 | 90 | 21 | -21.4 | 5' arm 3' arm | |||
6366 | + | 18921 | 90 | 21.5 | -29.1 | NP_045315 | 5' arm 3' arm | ||
6367 | + | 20188 | 90 | 20 | -24.1 | NP_045316 | 5' arm 3' arm | ||
6368 | + | 20440 | 89 | 19.5 | -28.9 | NP_045316 | 5' arm 3' arm | ||
6369 | + | 21765 | 89 | 22 | -26.1 | NP_045317 | 5' arm 3' arm | ||
6370 | + | 23333 | 86 | 19 | -23.2 | NP_045318 | 5' arm 3' arm | ||
6371 | + | 23689 | 90 | 19.5 | -21.5 | NP_045319 | 5' arm 3' arm | ||
6372 | + | 24324 | 87 | 19.5 | -29.4 | NP_045319 | 5' arm 3' arm | ||
6373 | + | 24893 | 89 | 19 | -25.6 | NP_045319 | 5' arm 3' arm | ||
6374 | + | 25439 | 89 | 23.5 | -21.1 | NP_045319 | 5' arm 3' arm | ||
6375 | + | 26268 | 89 | 19 | -21.8 | NP_045320 | 5' arm 3' arm | ||
6376 | + | 26629 | 89 | 19 | -19.8 | NP_045320 | 5' arm 3' arm | ||
6377 | + | 26980 | 86 | 20 | -24.3 | NP_045320 | 5' arm 3' arm | ||
6378 | + | 27097 | 89 | 22.5 | -23.6 | NP_045320 | 5' arm 3' arm | ||
6379 | + | 27640 | 90 | 21.5 | -21 | 5' arm 3' arm | |||
6380 | + | 28102 | 86 | 20 | -24.4 | NP_045321 | 5' arm 3' arm | ||
6381 | + | 29874 | 90 | 21.5 | -28.3 | NP_045321 | 5' arm 3' arm | ||
6382 | + | 29971 | 89 | 22 | -30.3 | NP_045321 | 5' arm 3' arm | ||
6383 | + | 31275 | 89 | 19 | -24.8 | NP_045322 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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