miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6530 - 12847 90 21 -31.2 NP_045312 5' arm      3' arm
6571 - 47801 90 24 -31.2 NP_045328 5' arm      3' arm
6484 + 108084 83 24.5 -31.2 5' arm      3' arm
6632 - 90704 90 21.5 -30.9 NP_045351 5' arm      3' arm
6567 - 43706 87 20.5 -30.7 NP_045326 5' arm      3' arm
6390 + 38566 89 22.5 -30.5 NP_045322 5' arm      3' arm
6448 + 80764 90 23.5 -30.5 NP_045345 5' arm      3' arm
6617 - 80931 87 19 -30.4 NP_045345 5' arm      3' arm
6655 - 101845 85 22.5 -30.4 NP_045363 5' arm      3' arm
6382 + 29971 89 22 -30.3 NP_045321 5' arm      3' arm
6506 + 126515 84 19.5 -30.3 5' arm      3' arm
6666 - 111703 84 19.5 -30.3 5' arm      3' arm
6423 + 58098 90 23.5 -30.3 NP_045331 5' arm      3' arm
6445 + 78591 89 19.5 -30.2 NP_045344 5' arm      3' arm
6485 + 108586 88 23 -30.1 5' arm      3' arm
6688 - 129632 88 23 -30.1 5' arm      3' arm
6501 + 121532 81 24.5 -30 5' arm      3' arm
6395 + 42466 88 22.5 -29.8 NP_045326 5' arm      3' arm
6391 + 39325 89 20 -29.8 NP_045322 5' arm      3' arm
6592 - 61370 89 23 -29.8 NP_045334 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.