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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21553 | + | 148476 | 89 | 24 | -26.1 | NP_851932 | 5' arm 3' arm | ||
| 21551 | + | 147327 | 89 | 24.5 | -31.3 | NP_851930 | 5' arm 3' arm | ||
| 21552 | + | 148043 | 90 | 22 | -22.5 | NP_851930 | 5' arm 3' arm | ||
| 21731 | - | 148132 | 90 | 20 | -29.6 | NP_851930 | 5' arm 3' arm | ||
| 21730 | - | 146439 | 88 | 19.5 | -23.1 | NP_851929 | 5' arm 3' arm | ||
| 21728 | - | 145792 | 87 | 19 | -25.6 | NP_851927 | 5' arm 3' arm | ||
| 21548 | + | 144874 | 89 | 20.5 | -22.4 | NP_851927 | 5' arm 3' arm | ||
| 21549 | + | 144994 | 89 | 22.5 | -21.6 | NP_851927 | 5' arm 3' arm | ||
| 21729 | - | 145893 | 90 | 21 | -24.9 | NP_851927 | 5' arm 3' arm | ||
| 21726 | - | 145110 | 90 | 20 | -24.9 | NP_851927 | 5' arm 3' arm | ||
| 21727 | - | 145232 | 88 | 21.5 | -26.4 | NP_851927 | 5' arm 3' arm | ||
| 21550 | + | 145230 | 89 | 21 | -24.6 | NP_851927 | 5' arm 3' arm | ||
| 21546 | + | 142808 | 89 | 19.5 | -27.9 | NP_851926 | 5' arm 3' arm | ||
| 21725 | - | 141821 | 87 | 19.5 | -21 | NP_851925 | 5' arm 3' arm | ||
| 21724 | - | 141524 | 87 | 21.5 | -27.5 | NP_851925 | 5' arm 3' arm | ||
| 21723 | - | 139043 | 90 | 19 | -23.9 | NP_851923 | 5' arm 3' arm | ||
| 21721 | - | 138481 | 90 | 19.5 | -22.5 | NP_851923 | 5' arm 3' arm | ||
| 21722 | - | 138726 | 89 | 20 | -26.6 | NP_851923 | 5' arm 3' arm | ||
| 21543 | + | 137680 | 89 | 21.5 | -30.4 | NP_851922 | 5' arm 3' arm | ||
| 21544 | + | 137894 | 89 | 19.5 | -30.4 | NP_851922 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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