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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21664 | - | 85704 | 89 | 24.5 | -20.2 | NP_851898 | 5' arm 3' arm | ||
| 21406 | + | 39528 | 87 | 21.5 | -20.3 | NP_851878 | 5' arm 3' arm | ||
| 21603 | - | 37888 | 89 | 21 | -20.3 | NP_851878 | 5' arm 3' arm | ||
| 21455 | + | 68847 | 88 | 20 | -20.3 | NP_851893 | 5' arm 3' arm | ||
| 21430 | + | 55431 | 88 | 19.5 | -20.3 | NP_851888 | 5' arm 3' arm | ||
| 21522 | + | 111304 | 86 | 22 | -20.3 | NP_851914 | 5' arm 3' arm | ||
| 21523 | + | 111681 | 90 | 24 | -20.3 | NP_851914 | 5' arm 3' arm | ||
| 21486 | + | 88422 | 90 | 20 | -20.4 | NP_851899 | 5' arm 3' arm | ||
| 21465 | + | 74164 | 89 | 19 | -20.4 | NP_851896 | 5' arm 3' arm | ||
| 21542 | + | 135483 | 87 | 23 | -20.5 | NP_851921 | 5' arm 3' arm | ||
| 21673 | - | 88899 | 90 | 22.5 | -20.5 | NP_851899 | 5' arm 3' arm | ||
| 21562 | - | 9639 | 90 | 19.5 | -20.5 | NP_851860 | 5' arm 3' arm | ||
| 21689 | - | 104038 | 84 | 19.5 | -20.5 | NP_851908 | 5' arm 3' arm | ||
| 21626 | - | 52501 | 87 | 19 | -20.6 | NP_851887 | 5' arm 3' arm | ||
| 21408 | + | 41064 | 88 | 19.5 | -20.7 | 5' arm 3' arm | |||
| 21597 | - | 33449 | 88 | 22 | -20.7 | NP_851874 | 5' arm 3' arm | ||
| 21592 | - | 26177 | 88 | 21.5 | -20.7 | NP_851871 | 5' arm 3' arm | ||
| 21586 | - | 21917 | 90 | 21 | -20.7 | NP_851868 | 5' arm 3' arm | ||
| 21610 | - | 42146 | 89 | 23.5 | -20.8 | NP_851880 | 5' arm 3' arm | ||
| 21410 | + | 42538 | 87 | 20 | -20.8 | NP_851880 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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