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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21573 | - | 13307 | 90 | 21 | -19.4 | NP_851864 | 5' arm 3' arm | ||
| 21400 | + | 33530 | 90 | 21 | -19.4 | NP_851874 | 5' arm 3' arm | ||
| 21720 | - | 137896 | 90 | 23 | -19.4 | NP_851922 | 5' arm 3' arm | ||
| 21690 | - | 107060 | 86 | 19 | -19.5 | NP_851911 | 5' arm 3' arm | ||
| 21389 | + | 23099 | 88 | 20 | -19.5 | NP_851869 | 5' arm 3' arm | ||
| 21419 | + | 50318 | 90 | 21 | -19.51 | NP_851885 | 5' arm 3' arm | ||
| 21636 | - | 59186 | 88 | 19 | -19.6 | NP_851889 | 5' arm 3' arm | ||
| 21572 | - | 12997 | 88 | 21.5 | -19.6 | NP_851864 | 5' arm 3' arm | ||
| 21700 | - | 114485 | 89 | 23 | -19.7 | NP_851916 | 5' arm 3' arm | ||
| 21637 | - | 60791 | 90 | 21 | -19.7 | NP_851889 | 5' arm 3' arm | ||
| 21492 | + | 91245 | 79 | 19 | -19.8 | NP_851901 | 5' arm 3' arm | ||
| 21591 | - | 26061 | 90 | 22.5 | -19.8 | NP_851871 | 5' arm 3' arm | ||
| 21501 | + | 94054 | 87 | 21 | -19.9 | 5' arm 3' arm | |||
| 21633 | - | 58072 | 90 | 20 | -19.9 | NP_851889 | 5' arm 3' arm | ||
| 21526 | + | 112139 | 87 | 26 | -20 | NP_851914 | 5' arm 3' arm | ||
| 21427 | + | 54940 | 86 | 19 | -20 | NP_851888 | 5' arm 3' arm | ||
| 21665 | - | 86223 | 88 | 19 | -20.1 | 5' arm 3' arm | |||
| 21386 | + | 21343 | 88 | 19 | -20.1 | NP_851868 | 5' arm 3' arm | ||
| 21480 | + | 84687 | 88 | 20 | -20.1 | NP_851898 | 5' arm 3' arm | ||
| 21505 | + | 98212 | 89 | 19.5 | -20.2 | NP_851906 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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