miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
6202	+	26222	88	20	-21.2	NP_045236		5' arm      3' arm
6204	+	40708	80	20.5	-26.5	NP_045241		5' arm      3' arm
6303	-	135649	87	20.5	-22			5' arm      3' arm
6274	-	56521	89	20.5	-20.5	NP_045248		5' arm      3' arm
6241	+	122401	87	20.5	-22			5' arm      3' arm
6210	+	67037	86	20.5	-20.1	NP_045254		5' arm      3' arm
6236	+	116693	90	20.5	-24.9	NP_045296		5' arm      3' arm
6308	-	141357	90	20.5	-24.9	NP_045296		5' arm      3' arm
6259	-	12594	83	21	-21.6	NP_045228		5' arm      3' arm
6290	-	115983	86	21	-21.2	NP_045296		5' arm      3' arm
6296	-	127643	84	21	-22.4	NP_045288		5' arm      3' arm
6222	+	97071	88	21	-22.7	NP_045271		5' arm      3' arm
6198	+	2407	86	21	-21.7			5' arm      3' arm
6200	+	13700	80	21	-26.4	NP_045229		5' arm      3' arm
6264	-	20369	87	21	-25.8	NP_045232		5' arm      3' arm
6250	+	142067	86	21	-21.2	NP_045296		5' arm      3' arm
6258	-	4292	88	21	-25.9	NP_045222		5' arm      3' arm
6203	+	38435	89	21	-20.3	NP_045241		5' arm      3' arm
6205	+	41732	85	21	-21.74	NP_045241		5' arm      3' arm
6266	-	26217	87	21	-23.3	NP_045236		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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