miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629732 NC_001844.1 Equid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6226 + 113318 87 19 -24.2 NP_045281 5' arm      3' arm
6272 - 44195 86 19 -26.6 NP_045241 5' arm      3' arm
6306 - 139182 81 19 -27.62 5' arm      3' arm
6289 - 115556 90 19.5 -20.3 NP_045281 5' arm      3' arm
6311 - 141915 86 19.5 -24.7 NP_045296 5' arm      3' arm
6233 + 116135 86 19.5 -24.7 NP_045281 5' arm      3' arm
6207 + 50843 89 19.5 -22.5 NP_045246 5' arm      3' arm
6239 + 121417 90 19.5 -27.2 NP_045294 5' arm      3' arm
6199 + 3707 88 19.5 -25.1 NP_045221 5' arm      3' arm
6282 - 101200 88 19.5 -19.9 NP_045273 5' arm      3' arm
6251 + 142494 90 19.5 -20.3 NP_045281 5' arm      3' arm
6214 + 72483 90 19.5 -27.3 NP_045257 5' arm      3' arm
6211 + 68273 89 19.5 -25.3 NP_045254 5' arm      3' arm
6305 - 136633 90 19.5 -27.2 NP_045294 5' arm      3' arm
6257 - 1094 87 19.5 -21.3 NP_045218 5' arm      3' arm
6301 - 129576 89 20 -21.4 NP_045288 5' arm      3' arm
6271 - 39901 88 20 -23.1 NP_045241 5' arm      3' arm
6202 + 26222 88 20 -21.2 NP_045236 5' arm      3' arm
6206 + 42630 90 20 -26.5 NP_045241 5' arm      3' arm
6225 + 110762 90 20 -20.4 NP_045280 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.