miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629732 NC_001844.1 Equid herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6253 - 255 89 25 -28.7 5' arm      3' arm
6265 - 23877 88 23 -23.3 5' arm      3' arm
6257 - 1094 87 19.5 -21.3 NP_045218 5' arm      3' arm
6199 + 3707 88 19.5 -25.1 NP_045221 5' arm      3' arm
6258 - 4292 88 21 -25.9 NP_045222 5' arm      3' arm
6260 - 12966 81 23.5 -22.3 NP_045228 5' arm      3' arm
6259 - 12594 83 21 -21.6 NP_045228 5' arm      3' arm
6200 + 13700 80 21 -26.4 NP_045229 5' arm      3' arm
6261 - 13558 86 22 -21.3 NP_045229 5' arm      3' arm
6262 - 14461 89 21.5 -23.8 NP_045229       
6201 + 17008 89 22 -27.93 NP_045230 5' arm      3' arm
6263 - 19765 90 27 -21.1 NP_045231 5' arm      3' arm
6264 - 20369 87 21 -25.8 NP_045232 5' arm      3' arm
6266 - 26217 87 21 -23.3 NP_045236 5' arm      3' arm
6267 - 26305 80 19 -25.1 NP_045236 5' arm      3' arm
6202 + 26222 88 20 -21.2 NP_045236 5' arm      3' arm
6268 - 29086 79 22.5 -20.4 NP_045238 5' arm      3' arm
6269 - 30208 88 23 -23.6 NP_045238 5' arm      3' arm
6273 - 45171 90 21.5 -19.9 NP_045241 5' arm      3' arm
6272 - 44195 86 19 -26.6 NP_045241 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.