miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
6305	-	136633	90	19.5	-27.2	NP_045294		5' arm      3' arm
6239	+	121417	90	19.5	-27.2	NP_045294		5' arm      3' arm
6298	-	128131	89	28.5	-26.94	NP_045288		5' arm      3' arm
6297	-	128041	89	28.5	-26.94	NP_045288		5' arm      3' arm
6299	-	128222	88	28.5	-26.94	NP_045288		5' arm      3' arm
6220	+	78804	89	21.5	-26.9	NP_045260		5' arm      3' arm
6295	-	122368	90	24	-26.7			5' arm      3' arm
6245	+	135682	90	24	-26.7			5' arm      3' arm
6315	-	142703	87	19	-26.6	NP_045296		5' arm      3' arm
6229	+	115347	87	19	-26.6	NP_045296		5' arm      3' arm
6272	-	44195	86	19	-26.6	NP_045241		5' arm      3' arm
6204	+	40708	80	20.5	-26.5	NP_045241		5' arm      3' arm
6206	+	42630	90	20	-26.5	NP_045241		5' arm      3' arm
6200	+	13700	80	21	-26.4	NP_045229		5' arm      3' arm
6217	+	77887	90	21.5	-26.3	NP_045260		5' arm      3' arm
6294	-	122109	88	23	-26.2	NP_045294		5' arm      3' arm
6246	+	135941	88	23	-26.2	NP_045294		5' arm      3' arm
6258	-	4292	88	21	-25.9	NP_045222		5' arm      3' arm
6212	+	68817	89	21.5	-25.8	NP_045255		5' arm      3' arm
6264	-	20369	87	21	-25.8	NP_045232		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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