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| GenBank Identifier | RefSeq Acc. | Name |
| 9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2079 | + | 122236 | 90 | 21 | -29.4 | NP_040193 | 5' arm 3' arm | ||
| 2074 | + | 108622 | 87 | 19 | -25.71 | NP_040193 | 5' arm 3' arm | ||
| 2075 | + | 108755 | 86 | 20.5 | -20.3 | NP_040193 | 5' arm 3' arm | ||
| 2095 | - | 105985 | 90 | 20.5 | -20.7 | NP_040193 | 5' arm 3' arm | ||
| 2109 | - | 123006 | 90 | 19 | -22.5 | NP_040193 | 5' arm 3' arm | ||
| 2073 | + | 108176 | 86 | 22 | -26.1 | NP_040193 | 5' arm 3' arm | ||
| 2069 | + | 106483 | 88 | 22 | -31.7 | NP_040193 | 5' arm 3' arm | ||
| 2107 | - | 122137 | 84 | 19.5 | -25.5 | NP_040193 | 5' arm 3' arm | ||
| 2104 | - | 121142 | 86 | 20.5 | -20.3 | NP_040193 | 5' arm 3' arm | ||
| 2099 | - | 107661 | 90 | 21 | -29.4 | NP_040193 | 5' arm 3' arm | ||
| 2110 | - | 123414 | 88 | 22 | -31.7 | NP_040193 | 5' arm 3' arm | ||
| 2082 | + | 123540 | 89 | 24.5 | -22.9 | NP_040193 | 5' arm 3' arm | ||
| 2083 | + | 123912 | 90 | 20.5 | -20.7 | NP_040193 | 5' arm 3' arm | ||
| 2102 | - | 111700 | 89 | 21 | -20.8 | NP_040191 | 5' arm 3' arm | ||
| 2103 | - | 113483 | 89 | 20 | -23.6 | NP_040188 | 5' arm 3' arm | ||
| 2076 | + | 118197 | 89 | 21 | -20.8 | NP_040186 | 5' arm 3' arm | ||
| 2078 | + | 121954 | 89 | 19.5 | -20.8 | NP_040184 | 5' arm 3' arm | ||
| 2081 | + | 123327 | 88 | 19.5 | -23.6 | NP_040184 | 5' arm 3' arm | ||
| 2071 | + | 107439 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm | ||
| 2108 | - | 122458 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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