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| GenBank Identifier | RefSeq Acc. | Name |
| 9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2091 | - | 92618 | 86 | 24.5 | -22.7 | NP_040174 | 5' arm 3' arm | ||
| 2082 | + | 123540 | 89 | 24.5 | -22.9 | NP_040193 | 5' arm 3' arm | ||
| 2058 | + | 23909 | 88 | 24.5 | -27.4 | 5' arm 3' arm | |||
| 2096 | - | 106357 | 89 | 24.5 | -22.9 | NP_040184 | 5' arm 3' arm | ||
| 2063 | + | 91776 | 86 | 24 | -23.7 | NP_040174 | 5' arm 3' arm | ||
| 2101 | - | 108096 | 89 | 23 | -29.7 | NP_040184 | 5' arm 3' arm | ||
| 2071 | + | 107439 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm | ||
| 2077 | + | 121801 | 89 | 23 | -29.7 | NP_040184 | 5' arm 3' arm | ||
| 2108 | - | 122458 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm | ||
| 2059 | + | 42454 | 89 | 22.5 | -22.9 | NP_040146 | 5' arm 3' arm | ||
| 2061 | + | 59052 | 87 | 22.5 | -22.1 | NP_040154 | 5' arm 3' arm | ||
| 2094 | - | 100348 | 89 | 22 | -27.1 | 5' arm 3' arm | |||
| 2106 | - | 121721 | 86 | 22 | -26.1 | NP_040184 | 5' arm 3' arm | ||
| 2073 | + | 108176 | 86 | 22 | -26.1 | NP_040193 | 5' arm 3' arm | ||
| 2069 | + | 106483 | 88 | 22 | -31.7 | NP_040193 | 5' arm 3' arm | ||
| 2110 | - | 123414 | 88 | 22 | -31.7 | NP_040193 | 5' arm 3' arm | ||
| 2086 | - | 66592 | 90 | 21.5 | -22.41 | NP_040160 | 5' arm 3' arm | ||
| 2088 | - | 73905 | 89 | 21.5 | -23.2 | NP_040163 | 5' arm 3' arm | ||
| 2065 | + | 100267 | 89 | 21.5 | -28.1 | NP_040181 | 5' arm 3' arm | ||
| 2066 | + | 103165 | 90 | 21.5 | -21 | NP_040183 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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