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| GenBank Identifier | RefSeq Acc. | Name |
| 9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2065 | + | 100267 | 89 | 21.5 | -28.1 | NP_040181 | 5' arm 3' arm | ||
| 2066 | + | 103165 | 90 | 21.5 | -21 | NP_040183 | 5' arm 3' arm | ||
| 2067 | + | 103804 | 90 | 21 | -19.9 | NP_040183 | 5' arm 3' arm | ||
| 2105 | - | 121275 | 87 | 19 | -25.71 | NP_040184 | 5' arm 3' arm | ||
| 2101 | - | 108096 | 89 | 23 | -29.7 | NP_040184 | 5' arm 3' arm | ||
| 2100 | - | 107943 | 89 | 19.5 | -20.8 | NP_040184 | 5' arm 3' arm | ||
| 2111 | - | 123752 | 89 | 20 | -25.7 | NP_040184 | 5' arm 3' arm | ||
| 2096 | - | 106357 | 89 | 24.5 | -22.9 | NP_040184 | 5' arm 3' arm | ||
| 2106 | - | 121721 | 86 | 22 | -26.1 | NP_040184 | 5' arm 3' arm | ||
| 2108 | - | 122458 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm | ||
| 2097 | - | 106570 | 88 | 19.5 | -23.6 | NP_040184 | 5' arm 3' arm | ||
| 2068 | + | 106145 | 89 | 20 | -25.7 | NP_040184 | 5' arm 3' arm | ||
| 2072 | + | 107760 | 84 | 19.5 | -25.5 | NP_040184 | 5' arm 3' arm | ||
| 2070 | + | 106891 | 90 | 19 | -22.5 | NP_040184 | 5' arm 3' arm | ||
| 2098 | - | 106765 | 87 | 19 | -29.1 | NP_040184 | 5' arm 3' arm | ||
| 2077 | + | 121801 | 89 | 23 | -29.7 | NP_040184 | 5' arm 3' arm | ||
| 2078 | + | 121954 | 89 | 19.5 | -20.8 | NP_040184 | 5' arm 3' arm | ||
| 2081 | + | 123327 | 88 | 19.5 | -23.6 | NP_040184 | 5' arm 3' arm | ||
| 2080 | + | 123132 | 87 | 19 | -29.1 | NP_040184 | 5' arm 3' arm | ||
| 2071 | + | 107439 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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