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| GenBank Identifier | RefSeq Acc. | Name |
| 9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2057 | + | 2288 | 90 | 20 | -19.8 | NP_040126 | 5' arm 3' arm | ||
| 2111 | - | 123752 | 89 | 20 | -25.7 | NP_040184 | 5' arm 3' arm | ||
| 2103 | - | 113483 | 89 | 20 | -23.6 | NP_040188 | 5' arm 3' arm | ||
| 2085 | - | 47796 | 90 | 20 | -25.2 | NP_040151 | 5' arm 3' arm | ||
| 2068 | + | 106145 | 89 | 20 | -25.7 | NP_040184 | 5' arm 3' arm | ||
| 2083 | + | 123912 | 90 | 20.5 | -20.7 | NP_040193 | 5' arm 3' arm | ||
| 2075 | + | 108755 | 86 | 20.5 | -20.3 | NP_040193 | 5' arm 3' arm | ||
| 2104 | - | 121142 | 86 | 20.5 | -20.3 | NP_040193 | 5' arm 3' arm | ||
| 2095 | - | 105985 | 90 | 20.5 | -20.7 | NP_040193 | 5' arm 3' arm | ||
| 2090 | - | 90317 | 90 | 21 | -19.7 | NP_040173 | 5' arm 3' arm | ||
| 2076 | + | 118197 | 89 | 21 | -20.8 | NP_040186 | 5' arm 3' arm | ||
| 2099 | - | 107661 | 90 | 21 | -29.4 | NP_040193 | 5' arm 3' arm | ||
| 2064 | + | 92143 | 88 | 21 | -26.6 | NP_040174 | 5' arm 3' arm | ||
| 2079 | + | 122236 | 90 | 21 | -29.4 | NP_040193 | 5' arm 3' arm | ||
| 2067 | + | 103804 | 90 | 21 | -19.9 | NP_040183 | 5' arm 3' arm | ||
| 2102 | - | 111700 | 89 | 21 | -20.8 | NP_040191 | 5' arm 3' arm | ||
| 2086 | - | 66592 | 90 | 21.5 | -22.41 | NP_040160 | 5' arm 3' arm | ||
| 2066 | + | 103165 | 90 | 21.5 | -21 | NP_040183 | 5' arm 3' arm | ||
| 2065 | + | 100267 | 89 | 21.5 | -28.1 | NP_040181 | 5' arm 3' arm | ||
| 2088 | - | 73905 | 89 | 21.5 | -23.2 | NP_040163 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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