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| GenBank Identifier | RefSeq Acc. | Name |
| 51557483 | NC_006151.1 | Suid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29476 | + | 92801 | 83 | 29 | -23.1 | YP_068373 | 5' arm 3' arm | ||
| 29475 | + | 92031 | 88 | 22.5 | -23.4 | YP_068372 | 5' arm 3' arm | ||
| 29474 | + | 91546 | 88 | 21.5 | -31.8 | YP_068371 | 5' arm 3' arm | ||
| 29605 | - | 90651 | 86 | 24 | -31.4 | YP_068371 | 5' arm 3' arm | ||
| 29607 | - | 91545 | 86 | 22.5 | -20.4 | YP_068371 | 5' arm 3' arm | ||
| 29473 | + | 89935 | 90 | 19.5 | -25.2 | YP_068371 | 5' arm 3' arm | ||
| 29608 | - | 91822 | 90 | 22.5 | -20 | YP_068371 | 5' arm 3' arm | ||
| 29606 | - | 91186 | 89 | 21 | -24.7 | YP_068371 | 5' arm 3' arm | ||
| 29603 | - | 87663 | 89 | 24.5 | -28.1 | YP_068370 | 5' arm 3' arm | ||
| 29604 | - | 87817 | 89 | 20 | -20.2 | YP_068370 | 5' arm 3' arm | ||
| 29472 | + | 89181 | 83 | 19.5 | -28.1 | YP_068370 | 5' arm 3' arm | ||
| 29470 | + | 87816 | 90 | 21 | -31.4 | YP_068370 | 5' arm 3' arm | ||
| 29471 | + | 89056 | 90 | 22.5 | -20.6 | YP_068370 | 5' arm 3' arm | ||
| 29601 | - | 84853 | 90 | 20 | -27.4 | YP_068368 | 5' arm 3' arm | ||
| 29469 | + | 85039 | 90 | 20 | -21.7 | YP_068368 | 5' arm 3' arm | ||
| 29602 | - | 85063 | 89 | 21 | -31.9 | YP_068368 | 5' arm 3' arm | ||
| 29467 | + | 84090 | 89 | 20.5 | -21.5 | YP_068367 | 5' arm 3' arm | ||
| 29464 | + | 83119 | 90 | 21.5 | -21.8 | YP_068367 | 5' arm 3' arm | ||
| 29468 | + | 84393 | 84 | 23.5 | -27.8 | YP_068367 | 5' arm 3' arm | ||
| 29466 | + | 83583 | 89 | 19.5 | -23.8 | YP_068367 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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