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| GenBank Identifier | RefSeq Acc. | Name |
| 51557483 | NC_006151.1 | Suid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29519 | + | 142549 | 90 | 22 | -28.1 | 5' arm 3' arm | |||
| 29395 | + | 21689 | 88 | 21 | -20 | 5' arm 3' arm | |||
| 29523 | - | 1705 | 90 | 24 | -34.1 | YP_068318 | 5' arm 3' arm | ||
| 29368 | + | 3243 | 85 | 19 | -28.7 | YP_068320 | 5' arm 3' arm | ||
| 29369 | + | 3577 | 89 | 22.5 | -26.4 | YP_068320 | 5' arm 3' arm | ||
| 29367 | + | 2774 | 86 | 22.5 | -21.7 | YP_068320 | 5' arm 3' arm | ||
| 29525 | - | 4613 | 87 | 23 | -25.7 | YP_068321 | 5' arm 3' arm | ||
| 29524 | - | 4168 | 88 | 21.5 | -21 | YP_068321 | 5' arm 3' arm | ||
| 29371 | + | 4340 | 88 | 24 | -22.6 | YP_068321 | 5' arm 3' arm | ||
| 29377 | + | 6783 | 90 | 24 | -30.7 | YP_068322 | 5' arm 3' arm | ||
| 29372 | + | 5243 | 90 | 21.5 | -20.7 | YP_068322 | 5' arm 3' arm | ||
| 29375 | + | 6531 | 84 | 21 | -26.1 | YP_068322 | 5' arm 3' arm | ||
| 29379 | + | 7075 | 89 | 20.5 | -29.7 | YP_068322 | 5' arm 3' arm | ||
| 29373 | + | 5557 | 89 | 19.5 | -23 | YP_068322 | 5' arm 3' arm | ||
| 29374 | + | 6054 | 90 | 19.5 | -20 | YP_068322 | 5' arm 3' arm | ||
| 29378 | + | 6936 | 87 | 19.5 | -34.5 | YP_068322 | 5' arm 3' arm | ||
| 29526 | - | 5069 | 90 | 21 | -20.3 | YP_068322 | 5' arm 3' arm | ||
| 29376 | + | 6689 | 90 | 20 | -20.3 | YP_068322 | 5' arm 3' arm | ||
| 29527 | - | 9082 | 90 | 23 | -27 | YP_068324 | 5' arm 3' arm | ||
| 29380 | + | 10086 | 88 | 19 | -23 | YP_068326 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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