miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29466	+	83583	89	19.5	-23.8	YP_068367		5' arm      3' arm
29366	+	2268	84	19.5	-24			5' arm      3' arm
29522	-	325	89	19.5	-21.2			5' arm      3' arm
29644	-	129944	86	19.5	-19.9			5' arm      3' arm
29597	-	81270	90	19.5	-23.1	YP_068365		5' arm      3' arm
29477	+	93050	90	19.5	-21.7	YP_068373		5' arm      3' arm
29473	+	89935	90	19.5	-25.2	YP_068371		5' arm      3' arm
29531	-	17603	90	19.5	-20.9	YP_068330		5' arm      3' arm
29407	+	28644	90	19.5	-23.4	YP_068333		5' arm      3' arm
29406	+	28355	87	19.5	-23.1	YP_068333		5' arm      3' arm
29417	+	36346	89	19.5	-27.61	YP_068339		5' arm      3' arm
29403	+	27138	90	19.5	-26.9	YP_068333		5' arm      3' arm
29564	-	51124	89	19.5	-30.2	YP_068344		5' arm      3' arm
29613	-	95755	89	19.5	-21.5			5' arm      3' arm
29408	+	28919	87	19.5	-25.3	YP_068334		5' arm      3' arm
29486	+	97370	88	20	-19.8	YP_068379		5' arm      3' arm
29650	-	139053	86	20	-22.7	YP_068393		5' arm      3' arm
29457	+	79657	86	20	-23	YP_068363		5' arm      3' arm
29424	+	44586	90	20	-21.6	YP_068340		5' arm      3' arm
29647	-	134122	86	20	-26.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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