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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 16236 | - | 230023 | 89 | 21.5 | -29.6 | YP_214170 | 5' arm 3' arm | ||
| 16235 | - | 229828 | 90 | 21.5 | -19.6 | YP_214170 | 5' arm 3' arm | ||
| 16234 | - | 229527 | 89 | 20 | -19.9 | YP_214170 | 5' arm 3' arm | ||
| 16233 | - | 229144 | 88 | 22 | -21.6 | 5' arm 3' arm | |||
| 16232 | - | 227186 | 90 | 22.5 | -23.6 | 5' arm 3' arm | |||
| 16231 | - | 224077 | 83 | 21 | -21.91 | YP_214165 | 5' arm 3' arm | ||
| 16230 | - | 223747 | 90 | 22 | -26.9 | YP_214165 | 5' arm 3' arm | ||
| 16229 | - | 223121 | 89 | 19.5 | -25.2 | YP_214164 | 5' arm 3' arm | ||
| 16228 | - | 222967 | 88 | 19.5 | -20.5 | YP_214164 | 5' arm 3' arm | ||
| 16227 | - | 221524 | 90 | 20.5 | -24.7 | YP_214162 | 5' arm 3' arm | ||
| 16226 | - | 218444 | 90 | 22.5 | -21.5 | YP_214159 | 5' arm 3' arm | ||
| 16225 | - | 214276 | 85 | 20.5 | -24.8 | 5' arm 3' arm | |||
| 16224 | - | 212785 | 90 | 22.5 | -21.2 | YP_214153 | 5' arm 3' arm | ||
| 16223 | - | 211989 | 90 | 20 | -21.9 | YP_214153 | 5' arm 3' arm | ||
| 16222 | - | 211764 | 88 | 20.5 | -24.9 | YP_214153 | 5' arm 3' arm | ||
| 16221 | - | 209865 | 90 | 22.5 | -25.6 | YP_214151 | 5' arm 3' arm | ||
| 16220 | - | 208104 | 89 | 21.5 | -25.9 | YP_214150 | 5' arm 3' arm | ||
| 16219 | - | 207988 | 89 | 22 | -25.1 | YP_214150 | 5' arm 3' arm | ||
| 16218 | - | 207866 | 88 | 22 | -20.8 | YP_214149 | 5' arm 3' arm | ||
| 16217 | - | 207469 | 90 | 22.5 | -22.8 | YP_214149 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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