miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4177	-	9157	90	22.5	-19.4	NP_042893		5' arm      3' arm
4145	+	4791	85	20.5	-19.42	NP_042888		5' arm      3' arm
4163	+	156024	85	20.5	-19.42	NP_042888		5' arm      3' arm
4144	+	4278	86	19	-19.6			5' arm      3' arm
4181	-	16163	87	22	-19.6	NP_042899		5' arm      3' arm
4171	-	3216	90	19.5	-19.6			5' arm      3' arm
4162	+	155511	86	19	-19.6			5' arm      3' arm
4170	-	3119	90	22.5	-19.8			5' arm      3' arm
4158	+	141549	89	23	-20	NP_042987		5' arm      3' arm
4190	-	155593	89	21.5	-20.2			5' arm      3' arm
4175	-	4360	89	21.5	-20.2			5' arm      3' arm
4189	-	155287	90	25	-20.6	NP_042887		5' arm      3' arm
4174	-	4054	90	25	-20.6	NP_042887		5' arm      3' arm
4157	+	134476	81	21	-21	NP_042982		5' arm      3' arm
4179	-	9710	90	21	-21.2	NP_042893		5' arm      3' arm
4178	-	9586	89	21	-21.5	NP_042893		5' arm      3' arm
4155	+	127734	90	24.5	-22	NP_042979		5' arm      3' arm
4154	+	108296	87	19	-22.2	NP_042966		5' arm      3' arm
4146	+	5604	82	19	-22.3	NP_042889		5' arm      3' arm
4164	+	156837	82	19	-22.3	NP_043001		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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