miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4183	-	117925	90	20.5	-32.7			5' arm      3' arm
4152	+	88027	85	22	-32.3	NP_042948		5' arm      3' arm
4184	-	153054	90	21.5	-29.2	NP_042884		5' arm      3' arm
4168	-	1821	90	21.5	-29.2	NP_042884		5' arm      3' arm
4169	-	2998	89	28	-29	NP_042997		5' arm      3' arm
4185	-	154231	89	28	-29	NP_042997		5' arm      3' arm
4180	-	12651	89	21.5	-28.8	NP_042895		5' arm      3' arm
4166	+	157806	89	20	-27.7	NP_042889		5' arm      3' arm
4148	+	6573	89	20	-27.7	NP_043001		5' arm      3' arm
4186	-	154429	88	22	-26.1			5' arm      3' arm
4176	-	9056	89	20	-25.9	NP_042893		5' arm      3' arm
4182	-	25121	81	20	-25.8	NP_042906		5' arm      3' arm
4156	+	127975	87	27.5	-25.2	NP_042979		5' arm      3' arm
4151	+	77696	90	19.5	-24.9	NP_042940		5' arm      3' arm
4150	+	9499	87	21.5	-24.8	NP_042893		5' arm      3' arm
4142	+	971	87	19	-24.5	NP_042884		5' arm      3' arm
4160	+	152204	87	19	-24.5	NP_042996		5' arm      3' arm
4147	+	6418	88	23	-24	NP_042889		5' arm      3' arm
4165	+	157651	88	23	-24	NP_043001		5' arm      3' arm
4159	+	150005	87	23	-23.9	NP_042993		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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