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GenBank Identifier | RefSeq Acc. | Name |
9628290 | NC_001664.1 | Human herpesvirus 6 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
4183 | - | 117925 | 90 | 20.5 | -32.7 | 5' arm 3' arm | |||
4152 | + | 88027 | 85 | 22 | -32.3 | NP_042948 | 5' arm 3' arm | ||
4184 | - | 153054 | 90 | 21.5 | -29.2 | NP_042884 | 5' arm 3' arm | ||
4168 | - | 1821 | 90 | 21.5 | -29.2 | NP_042884 | 5' arm 3' arm | ||
4169 | - | 2998 | 89 | 28 | -29 | NP_042997 | 5' arm 3' arm | ||
4185 | - | 154231 | 89 | 28 | -29 | NP_042997 | 5' arm 3' arm | ||
4180 | - | 12651 | 89 | 21.5 | -28.8 | NP_042895 | 5' arm 3' arm | ||
4166 | + | 157806 | 89 | 20 | -27.7 | NP_042889 | 5' arm 3' arm | ||
4148 | + | 6573 | 89 | 20 | -27.7 | NP_043001 | 5' arm 3' arm | ||
4186 | - | 154429 | 88 | 22 | -26.1 | 5' arm 3' arm | |||
4176 | - | 9056 | 89 | 20 | -25.9 | NP_042893 | 5' arm 3' arm | ||
4182 | - | 25121 | 81 | 20 | -25.8 | NP_042906 | 5' arm 3' arm | ||
4156 | + | 127975 | 87 | 27.5 | -25.2 | NP_042979 | 5' arm 3' arm | ||
4151 | + | 77696 | 90 | 19.5 | -24.9 | NP_042940 | 5' arm 3' arm | ||
4150 | + | 9499 | 87 | 21.5 | -24.8 | NP_042893 | 5' arm 3' arm | ||
4142 | + | 971 | 87 | 19 | -24.5 | NP_042884 | 5' arm 3' arm | ||
4160 | + | 152204 | 87 | 19 | -24.5 | NP_042996 | 5' arm 3' arm | ||
4147 | + | 6418 | 88 | 23 | -24 | NP_042889 | 5' arm 3' arm | ||
4165 | + | 157651 | 88 | 23 | -24 | NP_043001 | 5' arm 3' arm | ||
4159 | + | 150005 | 87 | 23 | -23.9 | NP_042993 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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