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GenBank Identifier | RefSeq Acc. | Name |
9628290 | NC_001664.1 | Human herpesvirus 6 |
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ID | strand | start position | length |
sRNA loop score![]() |
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
4146 | + | 5604 | 82 | 19 | -22.3 | NP_042889 | 5' arm 3' arm | ||
4154 | + | 108296 | 87 | 19 | -22.2 | NP_042966 | 5' arm 3' arm | ||
4142 | + | 971 | 87 | 19 | -24.5 | NP_042884 | 5' arm 3' arm | ||
4144 | + | 4278 | 86 | 19 | -19.6 | 5' arm 3' arm | |||
4160 | + | 152204 | 87 | 19 | -24.5 | NP_042996 | 5' arm 3' arm | ||
4162 | + | 155511 | 86 | 19 | -19.6 | 5' arm 3' arm | |||
4164 | + | 156837 | 82 | 19 | -22.3 | NP_043001 | 5' arm 3' arm | ||
4171 | - | 3216 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
4151 | + | 77696 | 90 | 19.5 | -24.9 | NP_042940 | 5' arm 3' arm | ||
4167 | + | 158244 | 88 | 19.5 | -23 | 5' arm 3' arm | |||
4149 | + | 7011 | 88 | 19.5 | -23 | 5' arm 3' arm | |||
4161 | + | 152645 | 88 | 19.5 | -22.9 | NP_042884 | 5' arm 3' arm | ||
4143 | + | 1412 | 88 | 19.5 | -22.9 | NP_042996 | 5' arm 3' arm | ||
4166 | + | 157806 | 89 | 20 | -27.7 | NP_042889 | 5' arm 3' arm | ||
4176 | - | 9056 | 89 | 20 | -25.9 | NP_042893 | 5' arm 3' arm | ||
4182 | - | 25121 | 81 | 20 | -25.8 | NP_042906 | 5' arm 3' arm | ||
4148 | + | 6573 | 89 | 20 | -27.7 | NP_043001 | 5' arm 3' arm | ||
4163 | + | 156024 | 85 | 20.5 | -19.42 | NP_042888 | 5' arm 3' arm | ||
4183 | - | 117925 | 90 | 20.5 | -32.7 | 5' arm 3' arm | |||
4145 | + | 4791 | 85 | 20.5 | -19.42 | NP_042888 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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