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| GenBank Identifier | RefSeq Acc. | Name |
| 9628290 | NC_001664.1 | Human herpesvirus 6 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 4185 | - | 154231 | 89 | 28 | -29 | NP_042997 | 5' arm 3' arm | ||
| 4169 | - | 2998 | 89 | 28 | -29 | NP_042997 | 5' arm 3' arm | ||
| 4156 | + | 127975 | 87 | 27.5 | -25.2 | NP_042979 | 5' arm 3' arm | ||
| 4174 | - | 4054 | 90 | 25 | -20.6 | NP_042887 | 5' arm 3' arm | ||
| 4189 | - | 155287 | 90 | 25 | -20.6 | NP_042887 | 5' arm 3' arm | ||
| 4155 | + | 127734 | 90 | 24.5 | -22 | NP_042979 | 5' arm 3' arm | ||
| 4187 | - | 154716 | 87 | 23 | -23.6 | 5' arm 3' arm | |||
| 4153 | + | 90838 | 89 | 23 | -22.7 | NP_042950 | 5' arm 3' arm | ||
| 4158 | + | 141549 | 89 | 23 | -20 | NP_042987 | 5' arm 3' arm | ||
| 4159 | + | 150005 | 87 | 23 | -23.9 | NP_042993 | 5' arm 3' arm | ||
| 4172 | - | 3483 | 87 | 23 | -23.6 | 5' arm 3' arm | |||
| 4147 | + | 6418 | 88 | 23 | -24 | NP_042889 | 5' arm 3' arm | ||
| 4165 | + | 157651 | 88 | 23 | -24 | NP_043001 | 5' arm 3' arm | ||
| 4170 | - | 3119 | 90 | 22.5 | -19.8 | 5' arm 3' arm | |||
| 4177 | - | 9157 | 90 | 22.5 | -19.4 | NP_042893 | 5' arm 3' arm | ||
| 4188 | - | 155089 | 86 | 22 | -22.7 | NP_042887 | 5' arm 3' arm | ||
| 4152 | + | 88027 | 85 | 22 | -32.3 | NP_042948 | 5' arm 3' arm | ||
| 4186 | - | 154429 | 88 | 22 | -26.1 | 5' arm 3' arm | |||
| 4181 | - | 16163 | 87 | 22 | -19.6 | NP_042899 | 5' arm 3' arm | ||
| 4173 | - | 3856 | 86 | 22 | -22.7 | NP_042999 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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