miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4187	-	154716	87	23	-23.6			5' arm      3' arm
4172	-	3483	87	23	-23.6			5' arm      3' arm
4149	+	7011	88	19.5	-23			5' arm      3' arm
4167	+	158244	88	19.5	-23			5' arm      3' arm
4143	+	1412	88	19.5	-22.9	NP_042996		5' arm      3' arm
4161	+	152645	88	19.5	-22.9	NP_042884		5' arm      3' arm
4153	+	90838	89	23	-22.7	NP_042950		5' arm      3' arm
4173	-	3856	86	22	-22.7	NP_042999		5' arm      3' arm
4188	-	155089	86	22	-22.7	NP_042887		5' arm      3' arm
4146	+	5604	82	19	-22.3	NP_042889		5' arm      3' arm
4164	+	156837	82	19	-22.3	NP_043001		5' arm      3' arm
4154	+	108296	87	19	-22.2	NP_042966		5' arm      3' arm
4155	+	127734	90	24.5	-22	NP_042979		5' arm      3' arm
4178	-	9586	89	21	-21.5	NP_042893		5' arm      3' arm
4179	-	9710	90	21	-21.2	NP_042893		5' arm      3' arm
4157	+	134476	81	21	-21	NP_042982		5' arm      3' arm
4189	-	155287	90	25	-20.6	NP_042887		5' arm      3' arm
4174	-	4054	90	25	-20.6	NP_042887		5' arm      3' arm
4175	-	4360	89	21.5	-20.2			5' arm      3' arm
4190	-	155593	89	21.5	-20.2			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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