miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4162	+	155511	86	19	-19.6			5' arm      3' arm
4163	+	156024	85	20.5	-19.42	NP_042888		5' arm      3' arm
4164	+	156837	82	19	-22.3	NP_043001		5' arm      3' arm
4165	+	157651	88	23	-24	NP_043001		5' arm      3' arm
4166	+	157806	89	20	-27.7	NP_042889		5' arm      3' arm
4167	+	158244	88	19.5	-23			5' arm      3' arm
4168	-	1821	90	21.5	-29.2	NP_042884		5' arm      3' arm
4169	-	2998	89	28	-29	NP_042997		5' arm      3' arm
4170	-	3119	90	22.5	-19.8			5' arm      3' arm
4171	-	3216	90	19.5	-19.6			5' arm      3' arm
4172	-	3483	87	23	-23.6			5' arm      3' arm
4173	-	3856	86	22	-22.7	NP_042999		5' arm      3' arm
4174	-	4054	90	25	-20.6	NP_042887		5' arm      3' arm
4175	-	4360	89	21.5	-20.2			5' arm      3' arm
4176	-	9056	89	20	-25.9	NP_042893		5' arm      3' arm
4177	-	9157	90	22.5	-19.4	NP_042893		5' arm      3' arm
4178	-	9586	89	21	-21.5	NP_042893		5' arm      3' arm
4179	-	9710	90	21	-21.2	NP_042893		5' arm      3' arm
4180	-	12651	89	21.5	-28.8	NP_042895		5' arm      3' arm
4181	-	16163	87	22	-19.6	NP_042899		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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