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GenBank Identifier | RefSeq Acc. | Name |
9628290 | NC_001664.1 | Human herpesvirus 6 |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
4145 | + | 4791 | 85 | 20.5 | -19.42 | NP_042888 | 5' arm 3' arm | ||
4166 | + | 157806 | 89 | 20 | -27.7 | NP_042889 | 5' arm 3' arm | ||
4146 | + | 5604 | 82 | 19 | -22.3 | NP_042889 | 5' arm 3' arm | ||
4147 | + | 6418 | 88 | 23 | -24 | NP_042889 | 5' arm 3' arm | ||
4150 | + | 9499 | 87 | 21.5 | -24.8 | NP_042893 | 5' arm 3' arm | ||
4178 | - | 9586 | 89 | 21 | -21.5 | NP_042893 | 5' arm 3' arm | ||
4179 | - | 9710 | 90 | 21 | -21.2 | NP_042893 | 5' arm 3' arm | ||
4177 | - | 9157 | 90 | 22.5 | -19.4 | NP_042893 | 5' arm 3' arm | ||
4176 | - | 9056 | 89 | 20 | -25.9 | NP_042893 | 5' arm 3' arm | ||
4180 | - | 12651 | 89 | 21.5 | -28.8 | NP_042895 | 5' arm 3' arm | ||
4181 | - | 16163 | 87 | 22 | -19.6 | NP_042899 | 5' arm 3' arm | ||
4182 | - | 25121 | 81 | 20 | -25.8 | NP_042906 | 5' arm 3' arm | ||
4151 | + | 77696 | 90 | 19.5 | -24.9 | NP_042940 | 5' arm 3' arm | ||
4152 | + | 88027 | 85 | 22 | -32.3 | NP_042948 | 5' arm 3' arm | ||
4153 | + | 90838 | 89 | 23 | -22.7 | NP_042950 | 5' arm 3' arm | ||
4154 | + | 108296 | 87 | 19 | -22.2 | NP_042966 | 5' arm 3' arm | ||
4155 | + | 127734 | 90 | 24.5 | -22 | NP_042979 | 5' arm 3' arm | ||
4156 | + | 127975 | 87 | 27.5 | -25.2 | NP_042979 | 5' arm 3' arm | ||
4157 | + | 134476 | 81 | 21 | -21 | NP_042982 | 5' arm 3' arm | ||
4158 | + | 141549 | 89 | 23 | -20 | NP_042987 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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