miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4176	-	9056	89	20	-25.9	NP_042893		5' arm      3' arm
4177	-	9157	90	22.5	-19.4	NP_042893		5' arm      3' arm
4179	-	9710	90	21	-21.2	NP_042893		5' arm      3' arm
4150	+	9499	87	21.5	-24.8	NP_042893		5' arm      3' arm
4178	-	9586	89	21	-21.5	NP_042893		5' arm      3' arm
4166	+	157806	89	20	-27.7	NP_042889		5' arm      3' arm
4147	+	6418	88	23	-24	NP_042889		5' arm      3' arm
4146	+	5604	82	19	-22.3	NP_042889		5' arm      3' arm
4163	+	156024	85	20.5	-19.42	NP_042888		5' arm      3' arm
4145	+	4791	85	20.5	-19.42	NP_042888		5' arm      3' arm
4174	-	4054	90	25	-20.6	NP_042887		5' arm      3' arm
4189	-	155287	90	25	-20.6	NP_042887		5' arm      3' arm
4188	-	155089	86	22	-22.7	NP_042887		5' arm      3' arm
4161	+	152645	88	19.5	-22.9	NP_042884		5' arm      3' arm
4168	-	1821	90	21.5	-29.2	NP_042884		5' arm      3' arm
4142	+	971	87	19	-24.5	NP_042884		5' arm      3' arm
4184	-	153054	90	21.5	-29.2	NP_042884		5' arm      3' arm
4187	-	154716	87	23	-23.6			5' arm      3' arm
4171	-	3216	90	19.5	-19.6			5' arm      3' arm
4186	-	154429	88	22	-26.1			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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