miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
4165	+	157651	88	23	-24	NP_043001		5' arm      3' arm
4164	+	156837	82	19	-22.3	NP_043001		5' arm      3' arm
4148	+	6573	89	20	-27.7	NP_043001		5' arm      3' arm
4173	-	3856	86	22	-22.7	NP_042999		5' arm      3' arm
4169	-	2998	89	28	-29	NP_042997		5' arm      3' arm
4185	-	154231	89	28	-29	NP_042997		5' arm      3' arm
4143	+	1412	88	19.5	-22.9	NP_042996		5' arm      3' arm
4160	+	152204	87	19	-24.5	NP_042996		5' arm      3' arm
4159	+	150005	87	23	-23.9	NP_042993		5' arm      3' arm
4158	+	141549	89	23	-20	NP_042987		5' arm      3' arm
4157	+	134476	81	21	-21	NP_042982		5' arm      3' arm
4156	+	127975	87	27.5	-25.2	NP_042979		5' arm      3' arm
4155	+	127734	90	24.5	-22	NP_042979		5' arm      3' arm
4154	+	108296	87	19	-22.2	NP_042966		5' arm      3' arm
4153	+	90838	89	23	-22.7	NP_042950		5' arm      3' arm
4152	+	88027	85	22	-32.3	NP_042948		5' arm      3' arm
4151	+	77696	90	19.5	-24.9	NP_042940		5' arm      3' arm
4182	-	25121	81	20	-25.8	NP_042906		5' arm      3' arm
4181	-	16163	87	22	-19.6	NP_042899		5' arm      3' arm
4180	-	12651	89	21.5	-28.8	NP_042895		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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