miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
82503188 NC_007605.1 Human herpesvirus 4

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
33264 + 2377 88 20 -20.7 YP_401633 5' arm      3' arm
33265 + 3666 89 19.5 -22.7 YP_401633 5' arm      3' arm
33266 + 3879 90 20 -20 YP_401633 5' arm      3' arm
33267 + 4166 88 20.5 -19.6 YP_401633 5' arm      3' arm
33268 + 4647 85 19 -22.3 YP_401633 5' arm      3' arm
33269 + 5085 89 21.5 -22.5 YP_401633 5' arm      3' arm
33270 + 5251 88 20 -26.4 YP_401633 5' arm      3' arm
33271 + 6653 90 22 -25.2 5' arm      3' arm
33272 + 7934 90 26 -24.2 5' arm      3' arm
33273 + 9009 86 28 -35 5' arm      3' arm
33274 + 9112 89 20.5 -20.4 5' arm      3' arm
33275 + 35971 89 20.5 -20.89 5' arm      3' arm
33276 + 40081 90 22.5 -26 YP_401645 5' arm      3' arm
33277 + 40749 90 21 -24.5 5' arm      3' arm
33278 + 41464 81 23.5 -24.7 ebv-mir-BHRF1-1 5' arm      
33279 + 41673 88 21.5 -22.5 5' arm      3' arm
33280 + 41814 87 21 -20.7 5' arm      3' arm
33281 + 42840 81 25 -22.7 ebv-mir-BHRF1-2 5' arm      3' arm
33282 + 42955 87 20.5 -21.7 ebv-mir-BHRF1-3 5' arm      
33283 + 44019 79 20.5 -26.1 YP_401647 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.