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GenBank Identifier | RefSeq Acc. | Name |
82503188 | NC_007605.1 | Human herpesvirus 4 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
33264 | + | 2377 | 88 | 20 | -20.7 | YP_401633 | 5' arm 3' arm | ||
33265 | + | 3666 | 89 | 19.5 | -22.7 | YP_401633 | 5' arm 3' arm | ||
33266 | + | 3879 | 90 | 20 | -20 | YP_401633 | 5' arm 3' arm | ||
33267 | + | 4166 | 88 | 20.5 | -19.6 | YP_401633 | 5' arm 3' arm | ||
33268 | + | 4647 | 85 | 19 | -22.3 | YP_401633 | 5' arm 3' arm | ||
33269 | + | 5085 | 89 | 21.5 | -22.5 | YP_401633 | 5' arm 3' arm | ||
33270 | + | 5251 | 88 | 20 | -26.4 | YP_401633 | 5' arm 3' arm | ||
33271 | + | 6653 | 90 | 22 | -25.2 | 5' arm 3' arm | |||
33272 | + | 7934 | 90 | 26 | -24.2 | 5' arm 3' arm | |||
33273 | + | 9009 | 86 | 28 | -35 | 5' arm 3' arm | |||
33274 | + | 9112 | 89 | 20.5 | -20.4 | 5' arm 3' arm | |||
33275 | + | 35971 | 89 | 20.5 | -20.89 | 5' arm 3' arm | |||
33276 | + | 40081 | 90 | 22.5 | -26 | YP_401645 | 5' arm 3' arm | ||
33277 | + | 40749 | 90 | 21 | -24.5 | 5' arm 3' arm | |||
33278 | + | 41464 | 81 | 23.5 | -24.7 | ebv-mir-BHRF1-1 | 5' arm | ||
33279 | + | 41673 | 88 | 21.5 | -22.5 | 5' arm 3' arm | |||
33280 | + | 41814 | 87 | 21 | -20.7 | 5' arm 3' arm | |||
33281 | + | 42840 | 81 | 25 | -22.7 | ebv-mir-BHRF1-2 | 5' arm 3' arm | ||
33282 | + | 42955 | 87 | 20.5 | -21.7 | ebv-mir-BHRF1-3 | 5' arm | ||
33283 | + | 44019 | 79 | 20.5 | -26.1 | YP_401647 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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