miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12752	-	34546	89	20.5	-31.5	NP_543100		5' arm      3' arm
12729	+	28529	86	23.5	-28.2	NP_543094		5' arm      3' arm
12719	+	12352	90	22.5	-27.2	NP_543071		5' arm      3' arm
12732	+	29915	86	19.5	-26.6	NP_543096		5' arm      3' arm
12731	+	28921	90	19.5	-26.5	NP_543095		5' arm      3' arm
12749	-	26884	86	20	-25.8	NP_543092		5' arm      3' arm
12745	-	21728	89	22	-25.3	NP_543086		5' arm      3' arm
12722	+	20699	85	20.5	-25	NP_543084		5' arm      3' arm
12725	+	24394	89	23	-24.9	NP_543090		5' arm      3' arm
12747	-	24482	89	19	-24.8	NP_543090		5' arm      3' arm
12720	+	19156	89	20	-24.6	NP_543080		5' arm      3' arm
12728	+	28157	87	25	-24.2	NP_543094		5' arm      3' arm
12741	+	38161	89	19	-24.2	NP_543105		5' arm      3' arm
12736	+	31769	90	22	-23.84	NP_543099		5' arm      3' arm
12730	+	28634	90	21	-23.8	NP_543095		5' arm      3' arm
12738	+	35309	89	23	-23.4	NP_543101		5' arm      3' arm
12723	+	20796	82	21.5	-22.9			5' arm      3' arm
12742	+	38698	86	19	-22.9	NP_543106		5' arm      3' arm
12734	+	31083	90	20	-22.2	NP_543097		5' arm      3' arm
12751	-	28355	89	20	-22.2	NP_543094		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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