miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12735	+	31629	89	19.5	-19.8	NP_543099		5' arm      3' arm
12753	-	37808	90	20.5	-19.87	NP_543104		5' arm      3' arm
12724	+	24159	90	25	-20	NP_543089		5' arm      3' arm
12737	+	33933	90	20	-20.1	NP_543100		5' arm      3' arm
12754	-	41937	84	21	-20.2	NP_543109		5' arm      3' arm
12718	+	11118	83	19	-20.4	NP_543069		5' arm      3' arm
12733	+	30891	88	21.5	-20.5	NP_543097		5' arm      3' arm
12750	-	27218	89	21	-20.6	NP_543092		5' arm      3' arm
12748	-	25692	87	20.5	-20.77	NP_543091		5' arm      3' arm
12727	+	27130	89	19.5	-20.9	NP_543092		5' arm      3' arm
12717	+	9475	89	25.5	-21	NP_543068		5' arm      3' arm
12739	+	36832	89	22.5	-21.4	NP_543103		5' arm      3' arm
12746	-	24372	87	19	-21.7	NP_543090		5' arm      3' arm
12740	+	37186	86	21	-21.9	NP_543104		5' arm      3' arm
12726	+	25541	89	20.5	-21.9	NP_543091		5' arm      3' arm
12744	-	21479	88	23.5	-22	NP_543086		5' arm      3' arm
12751	-	28355	89	20	-22.2	NP_543094		5' arm      3' arm
12743	+	39524	90	21	-22.2	NP_543106		5' arm      3' arm
12721	+	19252	90	21	-22.2	NP_543080		5' arm      3' arm
12734	+	31083	90	20	-22.2	NP_543097		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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