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| GenBank Identifier | RefSeq Acc. | Name |
| 13095578 | NC_002665.1 | Bovine herpesvirus 4 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10233 | - | 107344 | 88 | 19 | -21.9 | 5' arm 3' arm | |||
| 10218 | - | 216 | 85 | 19.5 | -26.1 | 5' arm 3' arm | |||
| 10219 | - | 2745 | 89 | 19.5 | -22.71 | NP_076495 | 5' arm 3' arm | ||
| 10213 | + | 100059 | 90 | 19.5 | -21.5 | NP_076567 | 5' arm 3' arm | ||
| 10231 | - | 87993 | 87 | 19.5 | -29.2 | NP_076556 | 5' arm 3' arm | ||
| 10208 | + | 72312 | 88 | 19.5 | -21.9 | NP_076549 | 5' arm 3' arm | ||
| 10225 | - | 24880 | 89 | 20 | -25.2 | NP_076509 | 5' arm 3' arm | ||
| 10209 | + | 86206 | 90 | 20 | -23 | NP_076556 | 5' arm 3' arm | ||
| 10226 | - | 28584 | 90 | 20 | -22 | NP_076513 | 5' arm 3' arm | ||
| 10215 | + | 104922 | 89 | 20 | -20.6 | NP_076569 | 5' arm 3' arm | ||
| 10229 | - | 83593 | 90 | 20 | -21.7 | NP_076556 | 5' arm 3' arm | ||
| 10214 | + | 102334 | 86 | 20 | -26.71 | NP_076568 | 5' arm 3' arm | ||
| 10217 | + | 108361 | 90 | 20.5 | -21.9 | NP_076572 | 5' arm 3' arm | ||
| 10228 | - | 80555 | 90 | 21 | -28 | NP_076555 | 5' arm 3' arm | ||
| 10200 | + | 12987 | 90 | 21 | -21 | NP_076500 | 5' arm 3' arm | ||
| 10206 | + | 59341 | 90 | 21 | -21.7 | NP_076537 | 5' arm 3' arm | ||
| 10205 | + | 26472 | 90 | 21 | -21 | NP_076511 | 5' arm 3' arm | ||
| 10227 | - | 64948 | 77 | 21 | -20.9 | NP_076541 | 5' arm 3' arm | ||
| 10201 | + | 15613 | 89 | 21 | -24.3 | NP_076501 | 5' arm 3' arm | ||
| 10203 | + | 23760 | 89 | 21.5 | -25.6 | NP_076509 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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