miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57790931 NC_006623.1 Gallid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31355 - 2117 90 19 -21 5' arm      3' arm
31301 + 1411 90 20.5 -28.4 5' arm      3' arm
31311 + 7945 88 23.5 -32.8 5' arm      3' arm
31312 + 8789 88 21.5 -20.9 5' arm      3' arm
31313 + 12164 89 20.5 -25.7 5' arm      3' arm
31314 + 24208 89 22.5 -26.3 YP_182345 5' arm      3' arm
31317 + 26890 90 22 -22.7 YP_182347 5' arm      3' arm
31315 + 25091 89 21.5 -33.2 5' arm      3' arm
31316 + 25437 90 19 -22.2 YP_182346 5' arm      3' arm
31310 + 4314 90 22.5 -23.5 5' arm      3' arm
31308 + 2699 89 23.5 -21.53 5' arm      3' arm
31306 + 2310 86 23.5 -23.5 5' arm      3' arm
31303 + 1704 90 25.5 -30.3 5' arm      3' arm
31299 + 658 88 25 -22.1 5' arm      3' arm
31300 + 1202 90 24.5 -26.7 5' arm      3' arm
31304 + 1904 82 24.5 -25.6 5' arm      3' arm
31309 + 2805 90 24.5 -23.6 5' arm      3' arm
31305 + 2155 89 24 -28.3 5' arm      3' arm
31298 + 517 90 23.5 -21.9 5' arm      3' arm
31302 + 1581 90 23.5 -26.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.