miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31352	-	879	90	22	-36.3			5' arm      3' arm
31315	+	25091	89	21.5	-33.2			5' arm      3' arm
31311	+	7945	88	23.5	-32.8			5' arm      3' arm
31307	+	2459	89	26	-31.6			5' arm      3' arm
31351	-	373	84	22.5	-31.5			5' arm      3' arm
31346	+	146100	89	19.5	-30.4	YP_182411		5' arm      3' arm
31373	-	115625	89	19.5	-30.4	YP_182397		5' arm      3' arm
31318	+	28528	86	20.5	-30.4			5' arm      3' arm
31303	+	1704	90	25.5	-30.3			5' arm      3' arm
31348	+	146307	87	23.5	-30.12	YP_182411		5' arm      3' arm
31371	-	115418	87	23.5	-30.12	YP_182397		5' arm      3' arm
31382	-	131076	89	27	-30	YP_182404		5' arm      3' arm
31381	-	130081	90	19.5	-29.6	YP_182404		5' arm      3' arm
31379	-	126361	88	19	-29.5	YP_182401		5' arm      3' arm
31374	-	116077	89	20	-29	YP_182397		5' arm      3' arm
31345	+	145648	89	20	-29	YP_182411		5' arm      3' arm
31337	+	126887	90	19	-28.9	YP_182402		5' arm      3' arm
31347	+	146210	90	19.5	-28.6	YP_182397		5' arm      3' arm
31397	-	146393	87	22	-28.6	YP_182411		5' arm      3' arm
31372	-	115515	90	19.5	-28.6	YP_182397		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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