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| GenBank Identifier | RefSeq Acc. | Name |
| 57790931 | NC_006623.1 | Gallid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31364 | - | 101606 | 89 | 19.5 | -19.5 | YP_182389 | 5' arm 3' arm | ||
| 31356 | - | 2243 | 88 | 20 | -19.7 | 5' arm 3' arm | |||
| 31365 | - | 110055 | 88 | 20 | -19.8 | 5' arm 3' arm | |||
| 31340 | + | 133967 | 90 | 20 | -19.8 | YP_182406 | 5' arm 3' arm | ||
| 31319 | + | 55975 | 90 | 20 | -19.8 | YP_182365 | 5' arm 3' arm | ||
| 31363 | - | 24110 | 80 | 20.5 | -20.2 | YP_182345 | 5' arm 3' arm | ||
| 31370 | - | 115239 | 88 | 19.5 | -20.3 | YP_182397 | 5' arm 3' arm | ||
| 31349 | + | 146486 | 88 | 19.5 | -20.3 | YP_182397 | 5' arm 3' arm | ||
| 31344 | + | 144761 | 80 | 22 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31375 | - | 116964 | 80 | 22 | -20.4 | YP_182397 | 5' arm 3' arm | ||
| 31330 | + | 115698 | 90 | 20 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31396 | - | 146027 | 90 | 20 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31339 | + | 129798 | 85 | 21.5 | -20.5 | YP_182404 | 5' arm 3' arm | ||
| 31321 | + | 66196 | 82 | 19.5 | -20.7 | YP_182367 | 5' arm 3' arm | ||
| 31312 | + | 8789 | 88 | 21.5 | -20.9 | 5' arm 3' arm | |||
| 31357 | - | 2398 | 89 | 22.5 | -20.9 | 5' arm 3' arm | |||
| 31380 | - | 129160 | 89 | 19 | -21 | YP_182403 | 5' arm 3' arm | ||
| 31355 | - | 2117 | 90 | 19 | -21 | 5' arm 3' arm | |||
| 31394 | - | 140786 | 86 | 20.5 | -21.3 | 5' arm 3' arm | |||
| 31332 | + | 120939 | 86 | 20.5 | -21.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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