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| GenBank Identifier | RefSeq Acc. | Name |
| 57790931 | NC_006623.1 | Gallid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31391 | - | 139594 | 89 | 19 | -21.4 | YP_182398 | 5' arm 3' arm | ||
| 31335 | + | 122131 | 89 | 19 | -21.4 | YP_182410 | 5' arm 3' arm | ||
| 31338 | + | 128908 | 82 | 23 | -21.4 | YP_182403 | 5' arm 3' arm | ||
| 31308 | + | 2699 | 89 | 23.5 | -21.53 | 5' arm 3' arm | |||
| 31342 | + | 139585 | 90 | 23 | -21.6 | 5' arm 3' arm | |||
| 31377 | - | 122140 | 90 | 23 | -21.6 | 5' arm 3' arm | |||
| 31333 | + | 121511 | 87 | 19 | -21.64 | 5' arm 3' arm | |||
| 31393 | - | 140214 | 87 | 19 | -21.64 | 5' arm 3' arm | |||
| 31360 | - | 17045 | 90 | 19 | -21.7 | YP_182338 | 5' arm 3' arm | ||
| 31298 | + | 517 | 90 | 23.5 | -21.9 | 5' arm 3' arm | |||
| 31299 | + | 658 | 88 | 25 | -22.1 | 5' arm 3' arm | |||
| 31336 | + | 122347 | 89 | 21.5 | -22.1 | YP_182410 | 5' arm 3' arm | ||
| 31390 | - | 139378 | 89 | 21.5 | -22.1 | YP_182410 | 5' arm 3' arm | ||
| 31316 | + | 25437 | 90 | 19 | -22.2 | YP_182346 | 5' arm 3' arm | ||
| 31385 | - | 133599 | 83 | 22.5 | -22.3 | YP_182405 | 5' arm 3' arm | ||
| 31354 | - | 1989 | 89 | 27.5 | -22.4 | 5' arm 3' arm | |||
| 31383 | - | 131314 | 88 | 23 | -22.4 | YP_182404 | 5' arm 3' arm | ||
| 31326 | + | 112975 | 84 | 21 | -22.6 | 5' arm 3' arm | |||
| 31317 | + | 26890 | 90 | 22 | -22.7 | YP_182347 | 5' arm 3' arm | ||
| 31366 | - | 112348 | 89 | 21.5 | -22.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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