miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2870 + 840 90 21 -22.62 NP_041170 5' arm      3' arm
2871 + 2943 90 19 -20.7 NP_041170 5' arm      3' arm
2872 + 4238 88 19 -32.1 NP_041171 5' arm      3' arm
2873 + 5091 89 20 -20.3 NP_041172 5' arm      3' arm
2874 + 5191 90 19.5 -23.9 NP_041094 5' arm      3' arm
2875 + 5728 89 21.5 -19.5 NP_041094 5' arm      3' arm
2876 + 5870 90 21 -27.7 NP_041172 5' arm      3' arm
2877 + 7648 90 21 -22.34 5' arm      3' arm
2878 + 8967 86 19 -20.1 NP_041174 5' arm      3' arm
2879 + 9197 90 19 -28.4 NP_041096 5' arm      3' arm
2880 + 9289 90 23.5 -24.3 NP_041174 5' arm      3' arm
2881 + 9585 85 25.5 -30.5 NP_041175 5' arm      3' arm
2882 + 9698 90 20 -22 NP_041175 5' arm      3' arm
2883 + 10427 88 20 -21.2 5' arm      3' arm
2884 + 10533 89 27 -20.8 5' arm      3' arm
2885 + 11292 89 20.5 -20.1 5' arm      3' arm
2886 + 13008 89 22 -27.5 NP_041099 5' arm      3' arm
2887 + 14092 85 22 -25.1 NP_041101 5' arm      3' arm
2888 + 14272 89 22 -19.4 NP_041101 5' arm      3' arm
2889 + 14398 90 21.5 -22.2 NP_041179 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.