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GenBank Identifier | RefSeq Acc. | Name |
9626821 | NC_001493.1 | Ictalurid herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2870 | + | 840 | 90 | 21 | -22.62 | NP_041170 | 5' arm 3' arm | ||
2871 | + | 2943 | 90 | 19 | -20.7 | NP_041170 | 5' arm 3' arm | ||
2872 | + | 4238 | 88 | 19 | -32.1 | NP_041171 | 5' arm 3' arm | ||
2873 | + | 5091 | 89 | 20 | -20.3 | NP_041172 | 5' arm 3' arm | ||
2874 | + | 5191 | 90 | 19.5 | -23.9 | NP_041094 | 5' arm 3' arm | ||
2875 | + | 5728 | 89 | 21.5 | -19.5 | NP_041094 | 5' arm 3' arm | ||
2876 | + | 5870 | 90 | 21 | -27.7 | NP_041172 | 5' arm 3' arm | ||
2877 | + | 7648 | 90 | 21 | -22.34 | 5' arm 3' arm | |||
2878 | + | 8967 | 86 | 19 | -20.1 | NP_041174 | 5' arm 3' arm | ||
2879 | + | 9197 | 90 | 19 | -28.4 | NP_041096 | 5' arm 3' arm | ||
2880 | + | 9289 | 90 | 23.5 | -24.3 | NP_041174 | 5' arm 3' arm | ||
2881 | + | 9585 | 85 | 25.5 | -30.5 | NP_041175 | 5' arm 3' arm | ||
2882 | + | 9698 | 90 | 20 | -22 | NP_041175 | 5' arm 3' arm | ||
2883 | + | 10427 | 88 | 20 | -21.2 | 5' arm 3' arm | |||
2884 | + | 10533 | 89 | 27 | -20.8 | 5' arm 3' arm | |||
2885 | + | 11292 | 89 | 20.5 | -20.1 | 5' arm 3' arm | |||
2886 | + | 13008 | 89 | 22 | -27.5 | NP_041099 | 5' arm 3' arm | ||
2887 | + | 14092 | 85 | 22 | -25.1 | NP_041101 | 5' arm 3' arm | ||
2888 | + | 14272 | 89 | 22 | -19.4 | NP_041101 | 5' arm 3' arm | ||
2889 | + | 14398 | 90 | 21.5 | -22.2 | NP_041179 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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