miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
49237297 NC_005946.1 Frog virus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28501 - 41924 86 20.5 -36.9 YP_031614 5' arm      3' arm
28486 - 28516 90 21.5 -36.7 YP_031600 5' arm      3' arm
28510 - 49409 85 21 -34.3 YP_031619 5' arm      3' arm
28401 + 62077 88 19 -34.2 YP_031633 5' arm      3' arm
28351 + 13301 90 22 -33.6 YP_031587 5' arm      3' arm
28356 + 16441 90 21 -33.3 YP_031590 5' arm      3' arm
28440 + 92036 89 23 -32.6 YP_031663 5' arm      3' arm
28345 + 9187 90 21.5 -32.5 YP_031586 5' arm      3' arm
28420 + 76528 88 23 -32.4 YP_031645 5' arm      3' arm
28334 + 2055 90 21 -32 YP_031580 5' arm      3' arm
28422 + 80291 88 23 -31.9 YP_031651 5' arm      3' arm
28358 + 19837 90 21.5 -31.7 5' arm      3' arm
28378 + 40999 86 21 -31.3 YP_031612 5' arm      3' arm
28336 + 2726 87 20 -31.3 5' arm      3' arm
28552 - 87060 90 24 -31.1 YP_031658 5' arm      3' arm
28512 - 52322 88 19 -31.1 YP_031623 5' arm      3' arm
28544 - 78984 89 23 -31.1 YP_031648 5' arm      3' arm
28564 - 102088 89 21 -30.8 YP_031674 5' arm      3' arm
28477 - 22712 89 25 -30.7 YP_031597 5' arm      3' arm
28485 - 27386 90 20.5 -30.4 YP_031600 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.