miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
49237297 NC_005946.1 Frog virus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28337 + 3222 90 23 -24.8 5' arm      3' arm
28469 - 17746 89 20 -22.3 5' arm      3' arm
28358 + 19837 90 21.5 -31.7 5' arm      3' arm
28571 - 105171 90 32.5 -29.7 5' arm      3' arm
28395 + 57228 89 20 -23.3 5' arm      3' arm
28399 + 60896 86 19 -27.8 5' arm      3' arm
28417 + 74559 90 22 -19.7 5' arm      3' arm
28441 + 92779 90 26 -24.6 5' arm      3' arm
28449 + 103036 90 19.5 -26.5 5' arm      3' arm
28521 - 60961 89 19 -20.1 5' arm      3' arm
28539 - 74613 85 19 -21.4 5' arm      3' arm
28336 + 2726 87 20 -31.3 5' arm      3' arm
28454 - 2810 83 19.5 -27.6 5' arm      3' arm
28569 - 103365 89 22.5 -24.6 5' arm      3' arm
28451 + 105082 90 29.5 -23.9 5' arm      3' arm
28452 - 457 90 19.5 -20.1 YP_031579 5' arm      3' arm
28335 + 2401 90 20 -22.5 YP_031580 5' arm      3' arm
28334 + 2055 90 21 -32 YP_031580 5' arm      3' arm
28453 - 2513 84 19 -25.4 YP_031580 5' arm      3' arm
28339 + 4110 85 19 -25.9 YP_031581 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.