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GenBank Identifier | RefSeq Acc. | Name |
49237297 | NC_005946.1 | Frog virus 3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28340 | + | 4258 | 89 | 21 | -19.9 | YP_031581 | 5' arm 3' arm | ||
28455 | - | 4578 | 87 | 21.5 | -25.7 | YP_031581 | 5' arm 3' arm | ||
28339 | + | 4110 | 85 | 19 | -25.9 | YP_031581 | 5' arm 3' arm | ||
28456 | - | 5723 | 86 | 19.5 | -21.3 | YP_031583 | 5' arm 3' arm | ||
28457 | - | 7276 | 90 | 23 | -25.2 | YP_031585 | 5' arm 3' arm | ||
28344 | + | 9093 | 88 | 19.5 | -24.3 | YP_031586 | 5' arm 3' arm | ||
28346 | + | 9385 | 87 | 23.5 | -22.9 | YP_031586 | 5' arm 3' arm | ||
28459 | - | 8139 | 89 | 21 | -22 | YP_031586 | 5' arm 3' arm | ||
28458 | - | 7751 | 88 | 20 | -29.8 | YP_031586 | 5' arm 3' arm | ||
28342 | + | 8497 | 88 | 21.5 | -20.1 | YP_031586 | 5' arm 3' arm | ||
28345 | + | 9187 | 90 | 21.5 | -32.5 | YP_031586 | 5' arm 3' arm | ||
28460 | - | 8897 | 85 | 20 | -19.9 | YP_031586 | 5' arm 3' arm | ||
28343 | + | 8996 | 79 | 19 | -26.5 | YP_031586 | 5' arm 3' arm | ||
28461 | - | 10282 | 89 | 21 | -24.3 | YP_031586 | 5' arm 3' arm | ||
28341 | + | 7987 | 90 | 19 | -26.8 | YP_031586 | 5' arm 3' arm | ||
28351 | + | 13301 | 90 | 22 | -33.6 | YP_031587 | 5' arm 3' arm | ||
28462 | - | 13261 | 86 | 19 | -21.2 | YP_031587 | 5' arm 3' arm | ||
28465 | - | 14534 | 90 | 20 | -20.5 | YP_031587 | 5' arm 3' arm | ||
28347 | + | 11903 | 90 | 21 | -24 | YP_031587 | 5' arm 3' arm | ||
28464 | - | 13761 | 90 | 20 | -19.4 | YP_031587 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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