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GenBank Identifier | RefSeq Acc. | Name |
49237297 | NC_005946.1 | Frog virus 3 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28572 | - | 105672 | 84 | 24 | -20.1 | YP_031677 | 5' arm 3' arm | ||
28570 | - | 104489 | 89 | 19.5 | -22.4 | YP_031676 | 5' arm 3' arm | ||
28450 | + | 104413 | 82 | 19.5 | -22.4 | YP_031676 | 5' arm 3' arm | ||
28567 | - | 102422 | 90 | 20 | -19.4 | YP_031674 | 5' arm 3' arm | ||
28448 | + | 102157 | 89 | 21.5 | -19.5 | YP_031674 | 5' arm 3' arm | ||
28568 | - | 102570 | 85 | 20.5 | -20.9 | YP_031674 | 5' arm 3' arm | ||
28563 | - | 101846 | 83 | 21 | -21.6 | YP_031674 | 5' arm 3' arm | ||
28566 | - | 102327 | 90 | 19.5 | -20.8 | YP_031674 | 5' arm 3' arm | ||
28565 | - | 102217 | 89 | 19 | -23.4 | YP_031674 | 5' arm 3' arm | ||
28564 | - | 102088 | 89 | 21 | -30.8 | YP_031674 | 5' arm 3' arm | ||
28446 | + | 98997 | 89 | 23.5 | -20.6 | YP_031670 | 5' arm 3' arm | ||
28447 | + | 99751 | 83 | 19.5 | -25.3 | YP_031670 | 5' arm 3' arm | ||
28561 | - | 99397 | 87 | 19 | -22.5 | YP_031670 | 5' arm 3' arm | ||
28562 | - | 99944 | 89 | 21.5 | -22.6 | YP_031670 | 5' arm 3' arm | ||
28560 | - | 99203 | 89 | 20.5 | -29.8 | YP_031670 | 5' arm 3' arm | ||
28559 | - | 98492 | 90 | 21 | -19.7 | YP_031669 | 5' arm 3' arm | ||
28557 | - | 97999 | 88 | 23.5 | -22.1 | YP_031669 | 5' arm 3' arm | ||
28558 | - | 98110 | 90 | 22.5 | -28.8 | YP_031669 | 5' arm 3' arm | ||
28556 | - | 97796 | 90 | 28.5 | -25.1 | YP_031669 | 5' arm 3' arm | ||
28442 | + | 93847 | 90 | 19 | -20.3 | YP_031666 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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