miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
52353967 NC_000852.3 Paramecium bursaria Chlorella virus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
753 + 81411 89 19.5 -22.4 NP_048507 5' arm      3' arm
754 + 117556 87 19.5 -22.5 NP_048586 5' arm      3' arm
755 + 142304 88 23 -23.4 NP_048632 5' arm      3' arm
756 + 157430 90 19.5 -22.8 NP_048670 5' arm      3' arm
757 + 158670 90 19 -21.1 NP_048673 5' arm      3' arm
758 + 174871 90 22.5 -28.8 NP_048709 5' arm      3' arm
759 + 208294 90 27 -22.6 NP_048785 5' arm      3' arm
760 + 208393 90 25 -26.8 NP_048785 5' arm      3' arm
761 + 210503 88 22 -26.4 NP_048787 5' arm      3' arm
762 + 210719 89 21.5 -25.2 NP_048787 5' arm      3' arm
763 + 260440 88 20.5 -19.8 NP_048896 5' arm      3' arm
764 + 270653 89 19 -22.2 NP_048919 5' arm      3' arm
765 + 293908 90 28 -22 NP_048971 5' arm      3' arm
766 + 301466 90 20 -24.6 NP_048981 5' arm      3' arm
767 + 301602 87 19 -25.4 NP_048981 5' arm      3' arm
768 + 306832 90 20 -20.1 NP_048991 5' arm      3' arm
769 + 310207 90 19 -24.1 NP_048999 5' arm      3' arm
770 + 328100 90 21.5 -22 5' arm      3' arm
771 - 3091 83 19.5 -22.3 NP_048353 5' arm      3' arm
772 - 33479 90 20.5 -24.32 NP_048408 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.