miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
24943089 NC_004367.1 Callitrichine herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17290 + 115499 89 24 -27.8 5' arm      3' arm
17296 + 121344 88 20 -22.3 5' arm      3' arm
17295 + 121253 89 20 -27.4 5' arm      3' arm
17297 + 121776 87 22 -23.5 5' arm      3' arm
17294 + 120613 89 21.5 -19.6 5' arm      3' arm
17291 + 115615 81 21.5 -32.6 5' arm      3' arm
17288 + 88426 89 21.5 -28.4 5' arm      3' arm
17293 + 116490 89 19.5 -25.9 5' arm      3' arm
17292 + 116242 90 23 -20.5 5' arm      3' arm
17281 + 56735 89 19.5 -25.9 5' arm      3' arm
17303 + 124688 87 22 -23.5 5' arm      3' arm
17300 + 123525 89 21.5 -19.6 5' arm      3' arm
17271 + 16550 86 20.5 -26 5' arm      3' arm
17273 + 22248 90 21 -31.2 5' arm      3' arm
17302 + 124256 88 20 -22.3 5' arm      3' arm
17274 + 23092 90 23 -20.5 5' arm      3' arm
17301 + 124165 89 20 -27.4 5' arm      3' arm
17306 + 126387 89 20.5 -22.5 5' arm      3' arm
17299 + 122878 78 20.5 -26.9 5' arm      3' arm
17305 + 125790 78 20.5 -26.9 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.